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Data & Germplasm
McFarland, BA, N AlKhalifah, M Bohn, J Bubert, ES Buckler, I Ciampitti, J Edwards, D Ertl, JL Gage, CM Falcon, S Flint-Garcia, MA Gore, C Graham, CN Hirsch, JB Holland, E Hood, D Hooker, D Jarquin, SM Kaeppler, J Knoll, G Kruger, N Lauter, EC Lee, DC Lima, A Lorenz, JP Lynch, J McKay, ND Miller, SP Moose, SC Murray, R Nelson, C Poudyal, T Rocheford, O Rodriguez, MC Romay, JC Schnable, PS Schnable, B Scully, R Sekhon, K Silverstein, M Singh, M Smith, EP Spalding, N Springer, K Thelen, P Thomison, M Tuinstra, J Wallace, R Walls, D Wills, RJ Wisser, W Xu, C-T Yeh & N de Leon. 2020. Maize genomes to fields (G2F): 2014-2017 field seasons: genotype, phenotype, climatic, soil, and inbred ear image datasets.BMC Res Notes 13: 71. https://doi.org/10.1186/s13104-020-4922-8.

Ramstein, G, S Larsson, J Cook, J Edwards, E Ersoz, S Flint-Garcia, C Gardner, J Holland, A Lorenz, M McMullen, M Millard, T Rocheford, M Tuinstra, P Bradbury, E Buckler, and M Romay. 2020. Dominance effects and functional enrichments improve prediction of agronomic traits in hybrid maize. Genetics 215: 215-230.

Falcon, CM, SM Kaeppler, EP Spalding, ND Miller, N Haase, N AlKhalifah, M Bohn, E Buckler, D Campbell, IA Ciampitti, L Coffey, J Edwards, D Ertl, S Flint-Garcia, MA Gore, C Graham, C Hirsch, J Holland, D Jarquin, J Knoll, N Lauter, C Lawrence-Dill, E Lee, AJ Lorenz, J Lynch, SC Murray, R Nelson, C Romay, T Rocheford, P Schnable, BT Scully, M Smith, N Springer, M Tuinstra, R Walton, T Weldekidan, R Wisser, W Xu, and N de Leon. 2020. Relative utility of agronomic, phenological, and morphological traits for assessing genotype-by-environment interaction in maize inbreds. Crop Science. 60:62-81.

Wisser, RJ, Z Fang, JB Holland, JEC Teixeira, J Dougherty, T Weldekidan, N de Leon, S Flint-Garcia, NC Lauter, SC Murray, W Xu, and A Hallauer. 2019. The Genomic Basis for Short-Term Evolution of Environmental Adaptation in Maize. Genetics. 213:1479-1494.

Xue, W, SN Anderson, X Wang, L Yang, PA Crisp, Q Li, J Noshay, PS Albert, JA Birchler, P Bilinski, MC Stitzer, J Ross-Ibarra, S Flint-Garcia, X Chen, NM Springer, and JF Doebley. 2019. Hybrid decay: a transgenerational epigenetic decline in vigor and viability triggered in backcross populations of teosinte with maize. Genetics. 213:143-160.

Gyawali, A, V Shrestha, KE Guill, S Flint Garcia, TM Beissinger. 2019. Single-plant GWAS coupled with bulk segregant analysis allows rapid identification and corroboration of plant-height candidate SNPs. BMC Plant Biol 19: 412.

Guo, T, X Yu, X Li, H Zhang, C Zhu, S Flint-Garcia, MD McMullen, JB Holland, SJ Szalma, RJ Wisser, and J Yu. 2019. Optimal designs for genomic selection in hybrid crops. Mol. Plant. 12: 390-401.

Mutiga, SK, Chepkwony, N, Hoekenga, OA, Flint-Garcia, SA, Nelson, RJ. 2019. The role of ear environment in postharvest susceptibility of maize to toxigenic Aspergillus flavus. Plant Breeding. 138:38-50.

Vanous, A, C Gardner, M Blanco, A Martin-Schwarze, A Lipka, S Flint-Garcia, M Bohn, J Edwards, T Lubberstedt. 2019. Stability Analysis of Kernel Quality Traits in Exotic-Derived Doubled Haploid Maize Lines. Plant Genome. 12:170114. doi:10.3835/plantgenome2017.12.0114

Vanous, A, C Gardner, M Blanco, A Martin-Schwarze, A Lipka, S Flint-Garcia, M Bohn, J Edwards, T Lubberstedt. 2018. Association mapping of flowering and height traits in germplasm enhancement of maize doubled haploid (GEM-DH) lines. Plant Genome. 11:170083. doi: 10.3835/plantgenome2017.09.0083.

Glowinski, A, and S Flint-Garcia. 2018. Germplasm Resources for Mapping Quantitative Traits in Maize. In: Bennetzen, J, Flint-Garcia, S, Hirsch, C, and Tuberosa, R. (eds). The Maize Genome. Springer International Publishing AG. Cham, Switzerland. P.143-159.

AlKhalifah, N, D Campbell, C Falcon, JM Gardiner, ND Miller, MC Romay, R Walls, R Walton, CT Yeh, M Bohn, J Bubert, ES Buckler, I Ciampitti, S Flint-Garcia, et al. 2018. Maize Genomes to Fields: 2014 and 2015 field season genotype, phenotype, environment, and inbred ear image datasets. BMC Research Notes 11:452.

Bohn, MO, JJ Marroquin, S Flint-Garcia, K Dashiell, DB Willmot and BE Hibbard. 2018. Quantitative trait loci mapping of western corn rootworm (Coleoptera: Chrysomelidae) host plant resistance in two populations of doubled haploid lines in maize (Zea mays l.). J Econ Entomol. 111:435-444.

Flint-Garcia, S. 2017. Kernel Evolution: From Teosinte to Maize. In Maize Kernel Development. Larkins, B (ed). CABI. Oxfordshire, UK. P. 1-15.

Gage, J, D Jarquin, C Romay, A Lorenz, E Buckler, S Kaeppler and 34 others. 2017. The effect of artificial selection on phenotypic plasticity in maize. Nature Communications. 8:1348.

Lennon, JR, M Krakowsky, M Goodman, S Flint-Garcia, and PJ Balint-Kurti. 2017. Identification of teosinte alleles for resistance to southern leaf blight in near isogenic maize lines. Crop Science. 57:1973-1983.

Karn, A, J Gillman, and S Flint-Garcia. 2017. Genetic analysis of teosinte alleles for kernel composition traits in maize. G3 7:1157-1164.

X Gu, T Lee, T Geng, K Liu, R Thoma, K Crowley, T Edrington, JM Ward, Y Wang, S Flint-Garcia, E Bell, and K Glenn. 2017. Assessment of natural variability of maize lipid transfer protein using a validated sandwich ELISA. J. Agric. Food Chem. 65:1740-1749.

Karn, A, C Heim, S Flint-Garcia, K Bilyeu, and J Gillman. 2017. Development of rigorous fatty acid near-infrared spectroscopy quantitation methods in support of soybean oil improvement. J Am Oil Chem Soc. 94:69-76.

Liu, Z, A Garcia, MD McMullen, and SA Flint-Garcia. 2016. Genetic analysis of kernel traits in maize-teosinte introgression populations. G3 6:2523-2530

Venkatesh, TV, AW Chassy, O Fiehn, S Flint-Garcia, Q Zeng, K Skogerson, GG Harrigan. 2016. Metabolomic assessment of key maize resources: GC-MS and NMR profiling of grain from B73 hybrids of the nested association mapping (NAM) founders and of geographically diverse landraces. J. Agric. Food Chem. 64:2162-2172

Liu, Z, J Cook, S Melia-Hancock, K Guill, C Bottoms, A Garcia, O Ott, RJ Nelson, J Recker, P Balint-Kurti, S Larsson, N Lepak, E Buckler, L Trimble, W Tracy, MD McMullen, and SA Flint-Garcia. 2016. Expanding maize genetic resources with pre-domestication alleles: maize-teosinte introgression populations. Plant Genome. 9: doi:10.3835/plantgenome2015.07.0053

Lennon, JR, M Krakowsky, M Goodman, S Flint-Garcia, and PJ Balint-Kurti. 2016. Identification of alleles conferring resistance to gray leaf spot in maize derived from its wild progenitor species teosinte (Zea mays ssp. parviglumis). Crop Science. 56:209-218.

Venkatesh, TV, GG Harrigan, T Perez, and S Flint-Garcia. 2015. Compositional Assessments of Key Maize Populations: B73 Hybrids of the Nested Association Mapping Founder Lines and Diverse Landrace Inbred Lines. J. Agric. Food Chem. 63:5282-5295.

Teixeira, JEC, T Weldekidan, N de Leon, S Flint-Garcia, JB Holland, NC Lauter, SC Murray, W Xu, DA Hessel, AE Kleintop, J Hawk, A Hallauer, RJ Wisser. 2015. Hallauer's Tuson: a Decade of Selection for Tropical-to-Temperate Phenological Adaptation in Maize. Heredity 114:229-240.

Hirsch, CN, S Flint-Garcia, T Beissinger, SR Eichten, S Deshpande, K Barry, MD McMullen, JB Holland, E Buckler, N Springer, RC Buell, N de Leon, SM Kaeppler. 2014. Insights into the effects of long-term artificial selection on seed size in maize. Genetics 198:409-421.

Peiffer JA, MC Romay, MA Gore, SA Flint-Garcia, Z Zhang, MJ Millard, CA Gardner, MD McMullen, JB Holland, PJ Bradbury, ES Buckler. 2014. The Genetic Architecture of Maize Height. Genetics 196:1337-1356.

Sood S, S Flint-Garcia, MC Willcox and JB Holland. 2014. Mining Natural Variation for Maize Improvement: Selection on Phenotypes and Genes. In Tuberosa R. et al. (eds.), Genomics of Plant Genetic Resources. p. 615-649.

Flint-Garcia S. 2013. Genetics and Consequences of Crop Domestication. J. Agric. Food Chem. 61:8267-8276.

Romay MC, MJ Millard, JC Glaubitz, JA Peiffer, KL Swarts, TM Casstevens, RJ Elshire, CB Acharya, SE Mitchell, SA Flint-Garcia, MD McMullen, JB Holland, ES Buckler, CA Gardner. 2013. Comprehensive genotyping of the USA national maize inbred seed bank. Genome Biol. 14:R55.

Peiffer JA, SA Flint-Garcia, N de Leon, MD McMullen, SM Kaeppler, ES Buckler. 2013. The Genetic Architecture of Maize Stalk Strength. PLoS ONE 8(6): e67066.

Voothluru P, HJ Thompson, SA Flint-Garcia, RE Sharp. 2013. Genetic variability of oxidase oxalate activity and elongation in water-stressed primary roots of diverse maize and rice lines. Plant Signal Behav. 8: e23454.

Hung, H-Y, LM Shannon, F Tian, PJ Bradbury, C Chen, SA Flint-Garcia, MD McMullen, D Ware, ES Buckler, JF Doebley, JB Holland. 2012. ZmCCT and the genetic basis of daylength adaptation underlying the post-domestication spread of maize. PNAS 109: E1913-1921.

Donald, PA, R Heinz, E Bernard, D Hershman, D Hensley, S Flint-Garcia, and R Joost. 2012. Distribution, host status and potential sources of resistance to Vittatidera zeaphila. Nematropica 42:91-95.

Cook, JP, MD McMullen, JB Holland, F Tian, P Bradbury, J Ross-Ibarra, ES Buckler, SA Flint-Garcia. 2012. Genetic architecture of maize kernel composition in the nested association mapping and inbred association panels. Plant Physiology 158:824-834.

Hung, H, CJ Browne, KE Guill, N Coles, M Eller, A Garcia, NK Lepak, S Melia-Hancock, M Oropeza-Rosas, S Salvo, N Upadyayula, E S Buckler, S Flint-Garcia, MD McMullen, T Rocheford, and JB Holland. 2012. The relationship between parental genetic or phenotypic divergence and progeny variation in the maize nested association mapping population. Heredity. 108:490-499.

Brown PJ, N Upadyayula, GS Mahone, F Tian, PJ Bradbury, S Myles, JB Holland, S Flint-Garcia, MD McMullen, ES Buckler, TR Rocheford. 2011. Distinct genetic architectures for male and female inflorescence traits of maize. PLoS Genet 7(11): e1002383.

Tian, F, PJ Bradbury, PJ Brown, H Hung, Q Sun, S Flint-Garcia, TR Rocheford, MD McMullen, JB Holland, ES Buckler. 2011. Genome-wide association study of leaf architecture in the maize nested association mapping population. Nature Genetics 43: 159 - 162. Supplementary Material

Dubois, PG, GT Olsefski, S Flint-Garcia, TL Setter, OA Hoekenga, TP Brutnell. 2010. Physiological and Genetic Characterization of End-of-Day Far-Red Light Response in Maize Seedlings. Plant Phys. 154:173-186.

Bottoms, C, S Flint-Garcia, M McMullen. 2010. IView: Introgression library visualization and query tool. BMC Bioinformatics. 11(suppl 6):S28.

Zhang, N, A Gur, Y Gibon, R Sulpice, S Flint-Garcia, MD McMullen, M Stitt, ES Buckler. 2010. Genetic analysis of central carbon metabolism unveils an amino acid substitution that alters maize NAD-dependent isocitrate dehydrogenase activity. PLoS One 5: e9991.

Flint-Garcia, SA, KE Guill, H Sanchez-Villeda, SG Schroeder, MD McMullen. 2009. Maize amino acid pathways maintain high levels of genetic diversity. Maydica 54:375-386.

Flint-Garcia, SA, ES Buckler, P Tiffin, E Ersoz, NM Springer. 2009. Heterosis Is Prevalent for Multiple Traits in Diverse Maize Germplasm. PLoS One. 4:e7433.

Flint-Garcia, SA, AL Bodnar, MP Scott. 2009. Wide Variability in Kernel Composition, Seed Characteristics, and Zein Profiles Among Diverse Maize Inbreds, Landraces, and Teosinte. Theor. Appl. Genet. 119:1129-1142.

Buckler, ES, et al. 2009. The Genetic Architecture of Maize Flowering Time. Science. 325:714-718 Supporting Online Material

McMullen, MD, et al. 2009. Genetic Properties of the Maize Nested Association Mapping Population. Science. 325:737-740. Supporting Online Material

Flint-Garcia, SA, KE Dashiell, DA Prischmann, MO Bohn, BE Hibbard. 2009. Conventional Screening Overlooks Resistance Sources: Rootworm Damage of Diverse Inbred Lines and Their B73 Hybrids Is Unrelated J. Econ. Entomol. 102: 1317-1324.

Sanchez-Villeda, H, S Schroeder, S Flint-Garcia, KE Guill, M Yamasaki, MD McMullen. 2008. DNAAlignEditor: DNA Alignment editor tool. BMC Bioinformatics. 9:154.

Hibbard, BE, DB Willmot, SA Flint-Garcia, LL Darrah. 2007. Registration of the Maize Germplasm CRW3(S1)C6 with Resistance to Western Corn Rootworm. J Plant Registrations. 1: 151-152.

Flint-Garcia, SA, A-C Thuillet, J Yu, G Pressoir, SM Romero, SE Mitchell, J Doebley, S Kresovich, MM Goodman, ES Buckler. 2005. Maize association population: a high resolution platform for QTL dissection. Plant J. 44:1054-1064. Supporting Information Figure S1 and Table S1

Flint-Garcia, SA, LL Darrah, MD McMullen, and BE Hibbard. 2003. Phenotypic and Marker-assisted Selection for Stalk Strength and Second-generation European Corn Borer Resistance in Maize. Theor. Appl. Genet. 107:1331-1336.

Flint-Garcia, SA, JM Thornsberry, ES Buckler. 2003. Structure of linkage disequilibrium in plants. Ann. Rev. of Plant Biol. 54:357-374.

Flint-Garcia, SA, MD McMullen, and LL Darrah. 2003. Genetic relationship of stalk strength and ear height in maize. Crop Sci. 43:23-31.

Flint-Garcia, SA, C Jampatong, LL Darrah, and MD McMullen. 2003. Quantitative trait locus analysis of stalk strength in four maize populations. Crop Sci. 43:13-22.

Cocciolone, SM, S Chopra, SA Flint-Garcia, MD McMullen, T Peterson. 2001. Tissue-specific patterns of a maize Myb transcription factor are epigenetically regulated. Plant J. 27:467-478.

Byrne, P, M McMullen, M Snook, T Musket, G Xu, E Lee, S Flint, N Widstrom, B Wiseman, and E Coe. 1997. Metabolic channeling suggested by QTL analysis of silk maysin and apimaysin concentration. Maize Genetics Cooperation Newsletter. 71:26-27.